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1

Tradition and Innovation in Scientists' Research Strategies

Foster, J. G., Rzhetsky, A., Evans, J. A.

Journal:

American Sociological Review

Year:

2015

Language:

english

File:

PDF, 939 KB

english, 2015

2

Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network

Zinovyev, Andrei, Czerwinska, Urszula, Cantini, Laura, Barillot, Emmanuel, Frahm, Klaus M., Shepelyansky, Dima L., Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2020

Language:

english

File:

PDF, 9.79 MB

english, 2020

3

Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference

Andrey Rzhetsky, Masatoshi Nei

Journal:

Journal of Molecular Evolution

Year:

1992

Language:

english

File:

PDF, 665 KB

english, 1992

4

Novel opportunities for computational biology and sociology in drug discovery

Lixia Yao, James A. Evans, Andrey Rzhetsky

Journal:

Trends in Biotechnology

Year:

2009

Language:

english

File:

PDF, 578 KB

english, 2009

5

Novel opportunities for computational biology and sociology in drug discovery: Corrected paper

Lixia Yao, James A. Evans, Andrey Rzhetsky

Journal:

Trends in Biotechnology

Year:

2010

Language:

english

File:

PDF, 584 KB

english, 2010

6

Origin of the Metazoan Phyla: Molecular Clocks Confirm Paleontological Estimates

Francisco Jose Ayala, Andrey Rzhetsky and Francisco J. Ayala

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1007 KB

english, 1998

7

AprioriGWAS, a New Pattern Mining Strategy for Detecting Genetic Variants Associated with Disease through Interaction Effects

Zhang, Qingrun, Long, Quan, Ott, Jurg, Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.12 MB

english, 2014

8

Global Quantitative Modeling of Chromatin Factor Interactions

Zhou, Jian, Troyanskaya, Olga G., Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

9

Health ROI as a measure of misalignment of biomedical needs and resources

Yao, Lixia, Li, Ying, Ghosh, Soumitra, Evans, James A, Rzhetsky, Andrey

Journal:

Nature Biotechnology

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

10

[ACM Press the 20th international symposium - San Jose, California, USA (2011.06.08-2011.06.11)] Proceedings of the 20th international symposium on High performance distributed computing - HPDC '11 - A distributed look-up architecture for text mining applications using mapreduce

Balkir, Atilla Soner, Foster, Ian, Rzhetsky, Andrey

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

11

Geographically Resolved Rhythms in Twitter Use Reveal Social Pressures on Daily Activity Patterns

Leypunskiy, Eugene, Kıcıman, Emre, Shah, Mili, Walch, Olivia J., Rzhetsky, Andrey, Dinner, Aaron R., Rust, Michael J.

Journal:

Current Biology

Year:

2018

Language:

english

File:

PDF, 6.54 MB

english, 2018

12

Alcoholic liver disease: A registry view on comorbidities and disease prediction

Grissa, Dhouha, Nytoft Rasmussen, Ditlev, Krag, Aleksander, Brunak, SÃ¸ren, Juhl Jensen, Lars, Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 1.98 MB

2020

13

Quick assessment of similarity of two sequences by comparison of their L-tuple frequencies

A.A. Zharkikh, A.Yu. Rzhetsky

Journal:

Year:

1993

Language:

english

File:

PDF, 967 KB

english, 1993

14

Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites

Andrey Rzhetsky, Masatoshi Nei

Journal:

Journal of Molecular Evolution

Year:

1994

Language:

english

File:

PDF, 329 KB

english, 1994

15

Evolutionary relationships of eukaryotic kingdoms

Sudhir Kumar, Andrey Rzhetsky

Journal:

Journal of Molecular Evolution

Year:

1996

Language:

english

File:

PDF, 1.41 MB

english, 1996

16

The enigma of intron origins

A. Rzhetsky, F. J. Ayala

Journal:

Cellular and Molecular Life Sciences

Year:

1999

Language:

english

File:

PDF, 218 KB

english, 1999

17

Six senses in the literature. The bleak sensory landscape of biomedical texts

Rodriguez-Esteban, Raul, Rzhetsky, Andrey

Journal:

Year:

2008

Language:

english

File:

PDF, 236 KB

english, 2008

18

Emergent behavior of growing knowledge about molecular interactions

Cokol, Murat, Iossifov, Ivan, Weinreb, Chani, Rzhetsky, Andrey

Journal:

Nature Biotechnology

Year:

2005

Language:

english

File:

PDF, 676 KB

english, 2005

19

How many scientific papers should be retracted?

Cokol, Murat, Iossifov, Ivan, Rodriguez-Esteban, Raul, Rzhetsky, Andrey

Journal:

Year:

2007

Language:

english

File:

PDF, 123 KB

english, 2007

20

Response by Cokol et al

Cokol, Murat, Iossifov, Ivan, Rodriguez-Esteban, Raul, Rzhetsky, Andrey

Journal:

Year:

2007

Language:

english

File:

PDF, 77 KB

english, 2007

21

Machine Science

Evans, J., Rzhetsky, A.

Journal:

Year:

2010

Language:

english

File:

PDF, 198 KB

english, 2010

22

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W.John Wilbur, Vasileios Hatzivassiloglou, Carol Friedman

Journal:

Journal of Biomedical Informatics

Year:

2004

Language:

english

File:

PDF, 577 KB

english, 2004

23

Two biomedical sublanguages: a description based on the theories of Zellig Harris

Carol Friedman, Pauline Kra, Andrey Rzhetsky

Journal:

Journal of Biomedical Informatics

Year:

2002

Language:

english

File:

PDF, 172 KB

english, 2002

24

Automatically identifying gene/protein terms in MEDLINE abstracts

Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky, W John Wilbur

Journal:

Journal of Biomedical Informatics

Year:

2002

Language:

english

File:

PDF, 143 KB

english, 2002

25

Human aldehyde dehydrogenase gene family

Akira Yoshida, Andrey Rzhetsky, Lily C. Hsu, Cheng Chang

Journal:

Year:

1998

Language:

english

File:

PDF, 597 KB

english, 1998

26

New directions in biomedical text annotation: definitions, guidelines and corpus construction

W John Wilbur, Andrey Rzhetsky, Hagit Shatkay

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 289 KB

english, 2006

27

Quantitative systems-level determinants of drug targets

Lixia Yao, Andrey Rzhetsky

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 249 KB

english, 2008

28

Birth and death of protein domains: A simple model of evolution explains power law behavior

Georgy P Karev, Yuri I Wolf, Andrey Y Rzhetsky, Faina S Berezovskaya, Eugene V Koonin

Journal:

BMC Evolutionary Biology

Year:

2002

Language:

english

File:

PDF, 514 KB

english, 2002

29

Representation of research hypotheses

Larisa N Soldatova, Andrey Rzhetsky

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 2.84 MB

english, 2011

30

Seeking a New Biology through Text Mining

Andrey Rzhetsky, Michael Seringhaus, Mark Gerstein

Journal:

Year:

2008

Language:

english

File:

PDF, 104 KB

english, 2008

31

A Chemosensory Gene Family Encoding Candidate Gustatory and Olfactory Receptors in Drosophila

Kristin Scott, Roscoe Brady Jr., Anibal Cravchik, Pavel Morozov, Andrey Rzhetsky, Charles Zuker, Richard Axel

Journal:

Year:

2001

Language:

english

File:

PDF, 1.49 MB

english, 2001

32

Using BLAST for identifying gene and protein names in journal articles

Michael Krauthammer, Andrey Rzhetsky, Pavel Morozov, Carol Friedman

Journal:

Year:

2000

Language:

english

File:

PDF, 191 KB

english, 2000

33

A graphic editor for analyzing signal-transduction pathways

Tomohiro Koike, Andrey Rzhetsky

Journal:

Year:

2000

Language:

english

File:

PDF, 1.87 MB

english, 2000

34

Two new genes from the human ATP-binding cassette transporter superfamily, ABCC11 and ABCC12, tandemly duplicated on chromosome 16q12

Jaana Tammur, Catherine Prades, Isabelle Arnould, Andrey Rzhetsky, Amy Hutchinson, Masashi Adachi, John D. Schuetz, Kathryn J. Swoboda, Louis J. Ptácek, Marie Rosier, Michael Dean, Rando Allikmets

Journal:

Year:

2001

Language:

english

File:

PDF, 632 KB

english, 2001

35

Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects

Andrey Rzhetsky, Sergey Kalachikov, Xiaolu Ye, Peisen Zhang, James J Russo

Journal:

Year:

1998

Language:

english

File:

PDF, 532 KB

english, 1998

36

A Spatial Map of Olfactory Receptor Expression in the Drosophila Antenna

Leslie B Vosshall, Hubert Amrein, Pavel S Morozov, Andrey Rzhetsky, Richard Axel

Journal:

Year:

1999

Language:

english

File:

PDF, 666 KB

english, 1999

37

Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships

Škunca, Nives, Bošnjak, Matko, Kriško, Anita, Panov, Panče, Džeroski, Sašo, Šmuc, Tomislav, Supek, Fran, Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.85 MB

english, 2013

38

Getting Started in Text Mining: Part Two

Rzhetsky, Andrey, Seringhaus, Michael, Gerstein, Mark B., Troyanskaya, Olga G.

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 205 KB

english, 2009

39

Divergence of Mammalian Higher Order Chromatin Structure Is Associated with Developmental Loci

Chambers, Emily V., Bickmore, Wendy A., Semple, Colin A., Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.98 MB

english, 2013

40

A recipe for high impact

Murat Cokol, Raul Rodriguez-Esteban, Andrey Rzhetsky

Journal:

Year:

2007

Language:

english

File:

PDF, 580 KB

english, 2007

41

Representation of probabilistic scientific knowledge

Larisa N Soldatova, Andrey Rzhetsky, Kurt De Grave…

Journal:

Journal of Biomedical Semantics

Year:

2013

Language:

english

File:

PDF, 540 KB

english, 2013

42

[Advances in Experimental Medicine and Biology] Systems Analysis of Human Multigene Disorders Volume 799 ||

Maltsev, Natalia, Rzhetsky, Andrey, Gilliam, T. Conrad

Year:

2014

Language:

english

File:

PDF, 3.03 MB

english, 2014

43

VOSTORG: a package of microcomputer programs for sequence analysis and construction of phylogenetic trees

Zharkikh, Andrey A., Rzhetsky, Andrey Yu., Morosov, Pavel S., Sitnikova, Tatiana L., Krushkal, Julia S.

Journal:

Year:

1991

Language:

english

File:

PDF, 429 KB

english, 1991

44

Exon/Intron Structure of Aldehyde Dehydrogenase Genes Supports the "Introns-Late" Theory

Andrey Rzhetsky, Francisco José Ayala, Lily C. Hsu, Cheng Chang and Akira Yoshida

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.31 MB

english, 1997

45

SCIENCE NOTEBOOK

JAMES EVANS and ANDREY RZHETSKY

Journal:

Year:

2010

Language:

english

File:

PDF, 348 KB

english, 2010

46

Tests of applicability of several substitution models for DNA sequence data.

Rzhetsky, A., Nei, M.

Journal:

Molecular Biology and Evolution

Year:

1995

Language:

english

File:

PDF, 1.93 MB

english, 1995

47

Analysis of a 69-kb Contiguous Genomic Sequence at a Putative Tumor Suppressor Gene Locus on Human Chromosome 6q27

Qu, Xiao-Yan, Hauptschein, Robert S., Rzhetsky, Andrey, Scotto, Luigi, Chien, Ming-Cheng, Ye, Xiaolu, Frigeri, Ferdinando, Rao, Pulivarthi H., Pasqualucci, Laura, Gamberi, Barbara, Deaven, Larry L., Z

Journal:

Mitochondrial DNA

Year:

1998

Language:

english

File:

PDF, 1.24 MB

english, 1998

48

[IEEE 2010 International Conference on Machine Learning and Applications (ICMLA) - Washington, DC, USA (2010.12.12-2010.12.14)] 2010 Ninth International Conference on Machine Learning and Applications - Discovering and Counting Biomedical Verbs

Waxmonsky, Sonjia, Goldsmith, John, Rzhetsky, Andrey

Year:

2010

Language:

english

File:

PDF, 170 KB

english, 2010

49

[Advances in Experimental Medicine and Biology] Systems Analysis of Human Multigene Disorders Volume 799 || A Personalized Treatment for Lung Cancer: Molecular Pathways, Targeted Therapies, and Genomic Characterization

Maltsev, Natalia, Rzhetsky, Andrey, Gilliam, T. Conrad

Year:

2014

Language:

english

File:

PDF, 300 KB

english, 2014

50

[IEEE 2010 Sixth IEEE International Conference on E-Science Workshops - Brisbane, Queensland, Australia (2010.12.7-2010.12.10)] 2010 Sixth IEEE International Conference on e-Science Workshops - NONUS: A No-Onus Platform for Generating Grant Reports

Malik, Tanu, Foster, Ian, Rzhetsky, Andrey, Foster, Jacob, Evans, James

Year:

2010

Language:

english

File:

PDF, 357 KB

english, 2010